ATGENOMIX SEQSLAB

Enterprise-Grade NGS BioIT with Speed, Scalability, and Reliability

10X

Accelerate your existing pipelines from FASTQ, BAM, to VCF

BWA/GATK4 industry best practice WGS turnaround with no downsampling

Computing and management cost savings in the cloud

Orchestrate a complex string of analysis tools and heterogeneous big data flow to a fast, reliable production workflow based on GATK4 Best Practices.
Design your own pipelines for optimal performance and results by chromosomes, contiguous unambiguous regions, discordant, soft-clipped reads, or coding regions with predictable turnaround.

Manage and run your jobs from a streamlined and informative web-based user interface with automatic resource scheduling to maximize workflow performance under the hood.
Analyze multiple samples at once to ensure run-to-run configuration consistency with no big data hassle.

Containerize your sequencing analysis tools on Docker and quickly run them on the Atgenomix cloud HPC environment.
A simple, yet powerful BioIT automation that takes the complexity out of IT environments and accelerates genomics initiatives.

DeepVariant germline SNPs and indels variant calling by deep neural network
GATK4 HaplotypeCaller germline SNPs and indels calling via local re-assembly of haplotypes
DELLY2 structural variant discovery by integrated paired-end and split-read analysis

Mutect2 somatic SNVs and indels calling via local assembly of haplotypes
Varscan2 somatic mutation calling for targeted, exome, and whole-genome resequencing data
DELLY2 somatic structural variant discovery by integrated paired-end and split-read analysis

Primary distributed file system using commodity hardware

Parallel file system that supports specialized requirements of HPC simulation environments

Online file storage web service for storing and accessing data on Microsoft Azure Data Lake Storage Gen2