10X
Accelerate your existing pipelines from FASTQ, BAM, to VCF
4 Hours
BWA/GATK4 industry best practice WGS turnaround with no downsampling
50%
Computing and management cost savings in the cloud
How It Works
Workload Parallelization
Orchestrate a complex string of analysis tools and heterogeneous big data flow to a fast, reliable production workflow based on GATK4 Best Practices.
Design your own pipelines for optimal performance and results by chromosomes, contiguous unambiguous regions, discordant, soft-clipped reads, or coding regions with predictable turnaround.
One-Click Job Submission
Manage and run your jobs from a streamlined and informative web-based user interface with automatic resource scheduling to maximize workflow performance under the hood.
Analyze multiple samples at once to ensure run-to-run configuration consistency with no big data hassle.
Self-Service, On-demand Computing
Containerize your sequencing analysis tools on Docker and quickly run them on the Atgenomix cloud HPC environment.
A simple, yet powerful BioIT automation that takes the complexity out of IT environments and accelerates genomics initiatives.
Featured Pipelines
Read Mapping
Complete GRCh38 reference including alternative sequences, plus decoys and HLA
GRCh37 (hg19) reference
Germline Analysis
DeepVariant germline SNPs and indels variant calling by deep neural network
GATK4 HaplotypeCaller germline SNPs and indels calling via local re-assembly of haplotypes
DELLY2 structural variant discovery by integrated paired-end and split-read analysis
Other Analysis
GATK4 GenotypeGVCFs joint genotyping on gVCF files produced by HaplotypeCaller
WhatsHap haplotype assembly
Integrated Storages
Hadoop DFS
Primary distributed file system using commodity hardware
Intel Lustre
Parallel file system that supports specialized requirements of HPC simulation environments
Azure Data Lake Storage
Online file storage web service for storing and accessing data on Microsoft Azure Data Lake Storage Gen2
